The information in this section describes ESPResSo++ as a whole. Information specific to the additions in this module are in subsequent sections.

Name: Reinsertion procedure for one component melts
Language: Python (2.7) and C++
Licence: GPL <https://opensource.org/licenses/gpl-license>
Documentation Tool: Sphinx and Doxygen
Application Documentation: http://espressopp.github.io/
Relevant Training Material: https://github.com/espressopp/espressopp/tree/master/examples

Reinsertion: A Component of the Hierarchical Equilibration Strategy for Polymer Melts¶

Purpose of Module
Background Information
Building and Testing
Source Code
References

The module is an implementation of the existing hierarchical strategy [1] for the equilibration of simple one-component polymer melts in ESPResSO++.

Purpose of Module ¶

To study the properties of polymer melts by numerical simulations, equilibrated configurations must be prepared. However, the relaxation time for high molecular weight polymer melts is huge and increases, according to reptation theory, with the third power of the molecular weight. Hence, an effective method for decreasing the equilibration time is required. The hierarchical strategy pioneered in Ref. [1] is a particularly suitable way to do this. The present module provides a part of that method described below.

To decrease the relaxation time, microscopic monomers are coarse-grained (CG) by mapping each subchain with $N_{b}$ monomers onto a soft blob. The CG system is then characterized by a much lower molecular weight and thus is equilibrated quickly. One thus obtains a configuration that is equilibrated on large scales but does not provide information about the structure on smaller (i.e. more fine-grained (FG)) scales.

To obtain the latter, the resolution is step-by-step increased by recursively applying a fine-graining procedure to the previous (more coarse-grained) level. In such a fine-graining step, each CG polymer chain is replaced with a more fine-grained chain, by dividing a CG blob into several FG blobs.

In the last step, microscopic monomers are reinserted into CG blobs. This reinsertion procedure is divided into 2 parts. Firstly, monomers are treated as mass points without non-bonded interaction. Starting from this state, repulsive non-bonded interactions are gradually introduced according to the feedback control mechanism explained in Ref. [2]. This procedure makes sure that the final fine-grained conformation is consistent with the conformation at the more coarse-grained level.

The present module provides the python script which performs the reinsertion procedure. The implementation detail is in following below.

The microscopic configuration of $N$ polymers consisted of $M$ monomers is prepared. The system size $L$ is determined by the number of density $\rho= (N \times M) /L^3 \approx 0.85$ . $m$ and $\sigma$ stands for the mass and the diameter of monomers.

We presuppose that equilibrated CG chain at $N_{b}=25$ is already obtained.
$25$ monomers of microscopic model are reinserted into all softblobs at $N_{b}=25$ randomly.
NVT MD simulation is carried out with bonding potential $V_{\rm{FENE}}$ , non bonding potential $V_{\rm{LJ}}$ only for connected monomers,

the constrain potential for the position described as

$V_{\rm{com}}(\mathbf{r}_{\rm{com}}^i) = k_{\rm{com}}(\mathbf{r}_{\rm{com}}^i - \mathbf{R}_i^{N_{b}})^2$ , where $\mathbf{r}_{\rm{com}}^i \equiv \frac{1}{25}\sum^{25}_{j=1} \mathbf{r}_{(j+25i)}$ ,

and the constrain potential for the radius of gyration defined as

$V_{R_{g}}({\rho}_i) = k_{R_{g}}({\rho}_i^2 - {R_{g}^i}^2)^2$ , where, $\rho_i^2 \equiv \frac{1}{25}\sum^{25}_{j=1}(\mathbf{r}_{(j+25i)} - \mathbf{R}_i^{N_{b}=25})^2$ .

In this time, MD simulation is performed without the excluded volume effect during dozens $\tau_{mon}$ , that stands for $\sqrt{m \sigma^2/k_{\rm{B}}T}$ .